BioPipeline Slide 8

Medium Throughput Slide Scanning System

Specifications

Platform

BioPipeline Slide 8

Microscope base

Nikon Ni-E motorized upright microscope

System type

Microscope-based semi-automated whole slide imaging system

Primary application

Medium-throughput whole slide imaging (WSI); also supports routine research microscopy

Configurations

Brightfield, Epifluorescence, or Brightfield and Epifluorescence

Antivibration table

Recommended, especially for 20x/40x magnfication imaging to reduce environmental vibration

Imaging Specifications

BioPipeline Slide 8

Imaging modalities

Transmitted light brightfield and brightfield contrasting techniques (phase, darkfield, DIC); widefield epifluorescence

Illumination

Up to 8-channel epifluorescence LED; LED transmitted light

Objectives

All air objective lenses compatible; selectable per configuration

Autofocus

AI-assisted; automatic mult-focus surface map for uneven samples

Imaging methods

Multidimensional XY, Z, wavelength, multi-stage position including tiling

Hardware triggering

Enabled for continous acquisition during XYZ movement

Brightfield Color Camera Specifications

BioPipeline Slide 8

Sensor type

CMOS

Shutter type

Global shutter

Resolution

5 MP (2448 × 2048 px)

Pixel size

3.45 μm × 3.45 μm

Interface

USB 3.0

Throughput & Performance

BioPipeline Slide 8

Standard slide capacity

8 slides per run

Optional stage insert

4-slide insert for 2×3" / 52×76 mm slides

Focus surface mapping

Various modes and sampling frequency according to the sample flatness

10 x 10mm Scan Speed

Continuous scanning acquires 10x10mm in 60 seconds @10x; tiling and blending occurs in parallel with the acquisition of the next slide.

Extended Depth of Focus (EDF) result images are acquired

Z stack capability

Software & Analysis

BioPipeline Slide 8

Software platform

NIS-Elements AR with dedicated slide scanning module

Acquisition interface

Guided wizard for brightfield and fluorescence; suitable for novice users

Sample detection

AI-assisted automatic sample selection with user interaction

Annotation

Project and slide annotation; multiple ROI support

Analysis modules

Optional NIS-Elements GA3; NIS-CC; additional modules selectable

Data sharing

Unified acquisition and analysis across all Nikon microscope platforms

Optional storage

BioPipeline Server: 10GbE dedicated network, 30× workstation capacity

File Formats

Nikon ND2, OME-TIFF, JPEG

Barcodes

1D: Codabar, Code39, Code93, Code128, EAN8, EAN13, ITF, DataBar, DataBarExpanded, UPCA, UPCE2D: Aztec, DataMatrix, MaxiCode, PDF417, QRCode, MicroQRCode, RMQRCode

Physical Specifications

BioPipeline Slide 8

Dimensions (W × D × H, without detector)

32 cm × 60 cm × 510 cm typical; +70 mm H with additional EPI port

Weight (approx)

32 kg

Power consumption

140 W (microscope body only)

Selectable & Optional Components

Objectives

Nikon Plan Apo Lambda D series recommended. All Nikon air objective lenses. Selection varies by configuration.

Monochrome Detectors

Teledyne BSI series or Hamamatsu Fusion series are options for Epifluorescence.

Epifluorescence Light Source

Nikon 4 channel D-LEDI or Lumencor 8 channel Spectra III are options for Epifluorescence.

Brightield, Epifluorescence, or both modalities

System can be configured for either modality, or with two detectors for both modalities.

Additional Software Modules

GA3, NIS-CC, and other NIS-Elements modules selectable.

4-Slide Stage Insert

Optional insert for 2×3" / 52×76 mm non-standard slide formats.