ECLIPSE Ji

Smart Imaging System

인터뷰

고객 인터뷰 Smart Automation with Confocal Microscope:
ECLIPSE Ji Changes the Future of 3D Cell Research

AdHuCell platform and Research Institute for Biosciences
University of Mons - UMONS
Professor Sylvain Gabriele, SYMBIOSE Lab

Professor Sylvain Gabriele at the University of Mons (UMONS), Belgium, is a leading researcher in mechanobiology, investigating how cells sense, respond to, and retain memory of mechanical forces.
His SYMBIOSE Lab, together with the AdHuCell platform he co-founded, combines advanced bioengineering and 3D cell culture technologies to explore key biological processes such as cell migration, tissue organization, and cancer dissemination from a physical perspective.

We spoke with Professor Gabriele about how the Nikon ECLIPSE Ji-AX Confocal Integrated System, recently installed in his laboratory, is enabling new insights into complex 3D biological systems and advancing research at the interface of imaging, mechanobiology, and engineered tissue models.

Research background and expertise in mechanobiology

- We delve into forefront research areas that unravel the mechanisms by which cells sense and respond to "force."

Curved epithelial tissues on a wavy substrate

• Madin-Darby canine kidney (MDCK) cells
• Alexa Fluor 488 Phalloidin for Actin (Green)
• Hoechst 33342 for DNA (Blue)

Image permission courtesy of Marine LUCIANO, PhD and Sylvain GABRIELE, PhD, University of Mons.
 

Could you please introduce yourself and describe your area of expertise and research focus?

I am Sylvain Gabriele, Professor at the University of Mons (Belgium), where I lead the SYMBIOSE Lab and co-direct the AdHuCell platform within the Research Institute for Biosciences. Our research focuses on mechanobiology, specifically how mechanical forces shape cell behavior. We investigate how cells sense, adapt to, and retain memory of physical cues such as matrix stiffness, confinement, and curvature. To address these questions, we combine advanced biomaterials, engineered 3D microsystems, and high-resolution imaging. This integrated approach allows us to uncover how mechanical interactions regulate key biological processes, including tissue morphogenesis, cancer invasion, and regeneration.

Overcoming 3D imaging challenges with ECLIPSE Ji

- We explore how ECLIPSE Ji’s superior usability and automation capabilities have overcome the challenges of imaging complex 3D culture samples.

Before using the ECLIPSE Ji, what were the main imaging challenges you faced when working with 3D cell cultures or complex matrices?

Our group invests significant effort in developing custom microsystems, 3D cell cultures, and bioengineered matrices to address key questions in cell biology. We needed an imaging system capable of automating routine steps, from sample detection to image acquisition, while maintaining high-quality optical sectioning across large 3D volumes. The Nikon ECLIPSE Ji-AX addresses these challenges by enabling fast, reliable imaging of complex samples with minimal user intervention.

How did you first hear about the ECLIPSE Ji, and what motivated you to try it?

Through our collaboration with Nikon Europe, we were among the first laboratories to explore the Ji-AX following its launch in Europe. I first encountered the system during a visit to the Nikon Bioimaging Lab in Leiden, where we were conducting NSPARC experiments. Seeing it in action was truly inspiring, as it delivered exactly the kind of intuitive and automated imaging workflow we had been looking for. We immediately recognized its potential as a bridge between high-content imaging and advanced 3D research, particularly for our organoid and mechanobiology projects within the newly established AdHuCell platform.

What specific features of the ECLIPSE Ji stood out to you upon first use?

First, the smart automation. The system can detect the sample, adjust illumination and focus, and optimize imaging conditions within seconds.

It is remarkably intuitive, allowing students and researchers to focus on their experiments rather than on instrument settings. We also value the flexibility it offers: users can operate it in a fully automated mode using Smart Assays or seamlessly switch to advanced AX confocal acquisition when more control is required.

Transforming 3D Analysis in Mechanobiology Research

- A new imaging approach bridges the gap between cellular ultrastructures and tissue-level dynamics, enabling deeper insights into complex biological systems.

Human mammary epithelial cell (MCF10-A)
F-actin stained with Alexa Fluor 488 phalloidin (green), Hoechst 33342 (blue), and fibronectin labeled with Alexa Fluor 594 (Orange)
Image permission courtesy of Yohalie KALUKULA, PhD and Sylvain GABRIELE, PhD, University of Mons.

How has the ECLIPSE Ji contributed to or advanced your research in mechanobiology?

It has transformed the way we capture and analyze 3D cell behavior. Using the confocal mode with a large field of view, we can image entire microtissues or migrating cell collectives while still resolving fine structures such as actin organization and nuclear deformations. This multi-scale capability is essential for linking cell-scale architecture to tissue-level mechanics, which lies at the core of our work.

Spheroids of human mammary epithelial cell (MCF10-A).
F-actin stained with Alexa Fluor 488 phalloidin (green), 
E-cadherin immunostaining (red), and nuclei stained with Hoechst 33342 (blue).
Image permission courtesy of Marine LUCIANO, PhD and Sylvain GABRIELE, PhD, University of Mons.

Which applications or experiments have benefited most from the ECLIPSE Ji in your lab?

Our recent work on the mechanics of breast tumor spheroids and the confined migration of small cell clusters has particularly benefited from the system. 

For instance, we can now track cytoskeletal reorganization as a function of spheroid size or deformation under mechanical stress, while generating high-content datasets that were previously too time-consuming to acquire.

How user-friendly did you find the interface and controls of the ECLIPSE Ji, especially for complex 3D cell cultures or mechanobiology experiments?

Extremely user-friendly. The interface guides users through each step, making it accessible even to non-experts. 
It is particularly well suited for training young researchers, while still delivering the level of precision and reproducibility required for quantitative biophysics and mechanobiology experiments.

Sample preparation under a laminar flow hood, followed by NIS-Elements Sample Navigation on a 96-well plate and confocal imaging.

Have you used the assays included with the ECLIPSE Ji and SE software? 
If so, what has been your experience?

Yes, we regularly use the “Smart Assays” integrated into the Ji and NIS-Elements software. They are highly intuitive and allow us to run standardized imaging workflows in just a few clicks. These assays are particularly well suited for routine experiments and have significantly streamlined our daily workflow, making image acquisition and analysis more robust, reproducible, and accessible to all users, regardless of their level of expertise.

Improving reproducibility and usability through automation

- By standardizing imaging workflows, automation helps ensure consistent data quality, making experiments more efficient and accessible to all users.

How have you found training new users on the ECLIPSE Ji? 
How does training on the ECLIPSE Ji compare with on a standard motorized microscope?

Training new users on the Ji is remarkably easy compared to traditional motorized microscopes. 

The interface is guided and visual, and because many steps are automated, users quickly gain confidence. It has completely changed the way we introduce imaging to new lab members, they can produce reliable data almost immediately.

Human mammary epithelial cell (MCF10-A) on adhesive micropatterns.
F-actin stained with Alexa Fluor 488 Phalloidin (Green) and Hoechst 33342 for DNA (Blue)
Image permission courtesy of Yohalie KALUKULA, PhD and Sylvain GABRIELE, PhD, University of Mons.
 

Human dermal fibroblasts. 
• F-actin stained with Alexa Fluor 594 –conjugated phalloidin (red)
• γH2AX immunostaining (green)
• Nuclei stained with Hoechst 33342 (blue)
Image permission courtesy of Roaxane AUCOUTURIER and 
Sylvain GABRIELE, PhD, University of Mons.

Have you noticed any improvements in reproducibility or data consistency since using this microscope?

The automation and predefined imaging protocols ensure that all users acquire data under consistent conditions, minimizing variability between sessions and operators. This has significantly improved the reproducibility and consistency of our datasets, particularly in long-term 3D culture experiments where small differences in illumination or focus previously affected results. For example, we now obtain more robust and reliable measurements of DNA damage using γH2AX staining combined with “Smart Assays”.

Multiscale analysis enabled by the integration of confocal systems

- From rapid screening to high-resolution imaging, the integrated workflow supports smooth, efficient analysis across multiple scales.
 

Are there any unique or innovative aspects of the ECLIPSE Ji that distinguish it from other microscopes you have used?

Its combination of automation, versatility, and optical performance. Few systems can switch so seamlessly from routine imaging to advanced confocal acquisition within the same platform. For us, it has become an everyday microscope that also enables cutting-edge research.

Curved epithelial tissues on a wavy substrate
Madin-Darby canine kidney (MDCK) cells
Left: Alexa Fluor 488 Phalloidin for Actin (Green) and Hoechst 33342 for DNA (Blue)
Right: Plasma membrane marker (Red) and Hoechst 33342 for DNA (Blue)
Image permission courtesy of Marine LUCIANO, PhD and Sylvain GABRIELE, PhD, University of Mons.
 

Has the compatibility of the ECLIPSE Ji with the AX Confocal enhanced your ability to study 3D cultures or bioengineered microsystems? If so, in what ways?

Absolutely. The Ji-AX integrates seamlessly with our AX confocal system and high-magnification silicone immersion objectives. We recently used it to investigate how the actin cortex contributes to the stabilization of mechanical memory during confined cell migration. We are now leveraging the Ji’s performance in AX confocal mode to study cell–cell interactions and the complex cytoskeletal architecture in curved epithelial tissues and breast spheroids composed of both healthy and tumor cells. This workflow, from rapid Ji imaging to high-resolution AX confocal acquisition, enables us to investigate the same biological process across multiple scales.

Image permission courtesy of Marine LUCIANO, PhD and Sylvain GABRIELE, PhD, University of Mons.

In what ways had the ECLIPSE Ji with AX Confocal improved your workflow or the quality of your results compared to previous systems you have used? 

Can you provide an example of an experiment where this system allowed you to capture details you couldn’t see before?

The ECLIPSE Ji-AX has significantly accelerated and streamlined our workflow. Its automation, combined with high-performance confocal imaging, allows us to move from sample to results much faster while maintaining excellent image quality. For example, when studying breast tumor spheroids, we can now resolve the organization of the actin cortex and detect subtle cytoskeletal rearrangements during deformation or confined migration—details that were very difficult to capture with our previous systems. This represents a major advance for linking mechanical forces to structural changes within cells.

Impact in the lab and future outlook

- Widely adopted in the lab, we discuss how the system continues to support research today while opening new possibilities for developing advanced 3D tumor models.

What feedback have you received from your team or collaborators about the ECLIPSE Ji?

The feedback has been extremely positive. Everyone in the lab appreciates how intuitive and accessible the Ji is, even new PhD students can generate publication-quality images after minimal training. Our collaborators have also been impressed by the speed, reproducibility, and consistency of the results, particularly for comparative studies on 2D cultures, spheroids and organoids. Overall, the Ji has quickly become one of the most widely used instruments in our imaging facility.

If you could summarize your experience with the ECLIPSE Ji in one or two sentences, what would you say?

The ECLIPSE Ji-AX has transformed the way we work, combining intelligent automation with high-end imaging to make advanced microscopy accessible to everyone in the lab. It represents the ideal balance between ease of use and scientific depth.

Would you recommend the Nikon ECLIPSE Ji to other researchers, and if so, why?

Definitely. It is ideal for researchers working with 3D cultures, organoids, or even single cells who require high-quality imaging without spending hours on instrument setup. It saves time, enhances reproducibility, and ultimately empowers scientists to focus on discovery rather than technical complexity.

Please tell us about your future goals and outlook.

One of our goals is to develop a predictive framework for mechanical memory in 3D tumor spheroids and organoids. We aim to understand how curvature, confinement, and mechanical stress dynamically reorganize the cytoskeleton and nucleus, and how these changes bias invasive behavior. By combining rapid epifluorescence screening with high-resolution confocal imaging on the ECLIPSE Ji-AX, we can directly link tissue-scale architecture to single-cell mechanical states within the same spheroids. In the coming years, we aim to establish 3D tumor models as quantitative platforms to investigate how mechanical history drives breast cancer dissemination.

The ECLIPSE Ji continues to support Prof Gabriele’s research, embodying Nikon’s vision of “a platform that brings advanced imaging within reach of researchers”

*The institutions and job titles listed with each researcher reflect their affiliation at the time of the interview.
* Comments in the video and article represent the opinions of experts/individuals and do not guarantee the efficacy, effectiveness, or performance of any specific product, nor endorse, recommend or advertise it.